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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015818408.1_cds_XP_016499618.1_13524
CDS Infomation

[gene=LOC107818187] [db_xref=GeneID:107818187] [protein=chlorophyllide a oxygenase, chloroplastic-like] [protein_id=XP_016499618.1] [location=complement(join(6160..6324,6901..7195,8039..8151,8254..8438,8583..8730,9055..9330,9643..9747,10278..10514,11075..11155))] [gbkey=CDS]
Sequence

ATGTCCGCCATTGCTACTTCTGCTGCTCTCTCTTTTCCTTTCTCTTTTTGCCGTTCTACC
AAGACTTTTACTACAAGAAAGTGTTTCAAAGGGGGATTTGGAGTGTTTGCAGTGTATGAG
GAGGCAGGTGAGTTAACAAACAAGAAAAGCTCCTGGTTGACACTCTTTGATGTGGAAGAT
CCAAGGTCAAAATTTCCTCAGTCTAAAGGCAAGTTCCTGGATGCAAATCAAGCTTTAGAA
GTTGCTAGATTTGATATGCAATATTGTGATTGGCGAGCTCGGCAAGACGTACTTACAATA
ATGCTCCTGCATGAAAAGGTTGTGGAAGTATTGAATCCTCTAGCTCGTGAATATAAATCT
ATTGGAACCATGAAGAAGGAACTCGCGGAGTTACAAGAAGAACTGTCTCGGGCTCACAAA
GAGGTACATATATCTGAGGTGCGGGTTTCTGCTGCTTTAGATAAGCTAGCTCACATGGAA
GCATTGGTTAATGATAGGCTGCTTCCGGAGAGGAGTACAGAAGAATCAGATTCCCCATCT
TCCTCCACCGGTACGTCTACAGTATCTAGAGATAATGCTAAAAGCAAGCAGCCTAGGAGA
ACCCTCAATGTGTCAGGTCCCGTCCAAGATTACAGCTCCTATTTGAAGAACTTTTGGTAT
CCTGTGGCTTTTTCTGCTGATGTTAAGGAAGATACCATGACACCAATTGATTGCTTTGAG
GAACCGTGGGTGATTTTTCGTGGGAAAGATGGAAAACCTGGATGTGTCCAGAACACATGT
GCACATAGAGCTTGCCCCCTTCATTTGGGTTCAGTGAATGAGGGTCGCATACAATGTCCT
TATCACGGGTGGGAATATTCAACAGACGGAAAATGTGAGAAAATGCCATCAACAAAATTT
CTGAATGTCAAGATCAAAGCTCTGCCATGCTTTGAGCAAGAGGGAATGATATGGATTTGG
CCTGGAAACGATCCTCCTGCAGCTACTCTTCCTTCTTTGCTACCACCTTCTGGATTTCAA
ATCCATGCAGAGATTGTCATGGAACTTCCGGTGGAACATGGGCTACTTTTGGACAATCTG
TTGGATCTTGCACATGCTCCTTTCACTCATACGTCTACATTTGCTAAAGGATGGACTGTC
CCAAGCTTTGTAAAATTTTTGACTCCTGCGTCTGGTCTGCAAGGATATTGGGATCCATAT
CCAATAGATATGGAATTTCGACCGCCTTGTATGGTTCTGTCAACCATTGGAATCTCAAAG
CCGGGCAAATTGGAAGGGCAGAGTATCAAAGAGTGCTCTACACACCTTCACCAACTTCAT
GTATGTTTACCTGCATCTAAACAGAAGACAAGGTTGTTATATAGGATGTCACTGGATTTT
GCTCCTGTTCTAAAACACATCCCTTTCATGCAATACGTGTGGAGGCATTTTGCTGAACAG
GTTTTAAATGAAGACCTACGGCTTGTGATTGGTCAGCAAGAACGGATGCTCAATGGTGCT
AACATTTGGAACCTGCCTGTGTCATACGATAAGCTAGGAGTGAGGTATAGAATATGGAGA
GACGCTGTAGAGAGTGGAGCAAAGCAGTTGCCGTTCAGCAAATGA

Peptide Sequence

PEP ID

XP_016499618.1
PEP Infomation

PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Nicotiana tabacum]
Sequence

MSAIATSAALSFPFSFCRSTKTFTTRKCFKGGFGVFAVYEEAGELTNKKSSWLTLFDVED
PRSKFPQSKGKFLDANQALEVARFDMQYCDWRARQDVLTIMLLHEKVVEVLNPLAREYKS
IGTMKKELAELQEELSRAHKEVHISEVRVSAALDKLAHMEALVNDRLLPERSTEESDSPS
SSTGTSTVSRDNAKSKQPRRTLNVSGPVQDYSSYLKNFWYPVAFSADVKEDTMTPIDCFE
EPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTKF
LNVKIKALPCFEQEGMIWIWPGNDPPAATLPSLLPPSGFQIHAEIVMELPVEHGLLLDNL
LDLAHAPFTHTSTFAKGWTVPSFVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISK
PGKLEGQSIKECSTHLHQLHVCLPASKQKTRLLYRMSLDFAPVLKHIPFMQYVWRHFAEQ
VLNEDLRLVIGQQERMLNGANIWNLPVSYDKLGVRYRIWRDAVESGAKQLPFSK

Transcript Sequence

Gene sequence data has not been registered.